Nucleic Acids Research

Articles:

Philipp Milkereit, Holger Kühn, Nicole Gas, and Herbert Tschochner

The pre-ribosomal network
Nucl. Acids Res. 2003 31: 799-804; doi:10.1093/nar/gkg165 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Brian M. Swalla, Richard I. Gumport, and Jeffrey F. Gardner

Conservation of structure and function among tyrosine recombinases: homology-based modeling of the lambda integrase core-binding domain
Nucl. Acids Res. 2003 31: 805-818; doi:10.1093/nar/gkg142 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Grischa H. Toedt, Ravi Krishnan, and Peter Friedhoff

Site-specific protein modification to identify the MutL interface of MutH
Nucl. Acids Res. 2003 31: 819-825; doi:10.1093/nar/gkg191 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Haico van Attikum and Paul J. J. Hooykaas

Genetic requirements for the targeted integration of Agrobacterium T-DNA in Saccharomyces cerevisiae
Nucl. Acids Res. 2003 31: 826-832; doi:10.1093/nar/gkg183 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Giuseppina M. Carbone, Eileen M. McGuffie, Angela Collier, and Carlo V. Catapano

Selective inhibition of transcription of the Ets2 gene in prostate cancer cells by a triplex-forming oligonucleotide
Nucl. Acids Res. 2003 31: 833-843; doi:10.1093/nar/gkg198 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

James H. Thorpe, Susana C. M. Teixeira, Benjamin C. Gale, and Christine J. Cardin

Crystal structure of the complementary quadruplex formed by d(GCATGCT) at atomic resolution
Nucl. Acids Res. 2003 31: 844-849; doi:10.1093/nar/gkg168 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Valérie Goldschmidt, Chantal Ehresmann, Bernard Ehresmann, and Roland Marquet

Does the HIV-1 primer activation signal interact with tRNA₃^Lys during the initiation of reverse transcription?
Nucl. Acids Res. 2003 31: 850-859; doi:10.1093/nar/gkg187 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Barbara Schrammeijer, Amke den Dulk-Ras, Annette C. Vergunst, Esmeralda Jurado Jácome, and Paul J. J. Hooykaas

Analysis of Vir protein translocation from Agrobacterium tumefaciens using Saccharomyces cerevisiae as a model: evidence for transport of a novel effector protein VirE3
Nucl. Acids Res. 2003 31: 860-868; doi:10.1093/nar/gkg179 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Timofey S. Rozhdestvensky, Thean Hock Tang, Inna V. Tchirkova, Jürgen Brosius, Jean-Pierre Bachellerie, and Alexander Hüttenhofer

Binding of L7Ae protein to the K-turn of archaeal snoRNAs: a shared RNA binding motif for C/D and H/ACA box snoRNAs in Archaea
Nucl. Acids Res. 2003 31: 869-877; doi:10.1093/nar/gkg175 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Ute Preuss, Gerd Landsberg, and Karl Heinz Scheidtmann

Novel mitosis-specific phosphorylation of histone H3 at Thr11 mediated by Dlk/ZIP kinase
Nucl. Acids Res. 2003 31: 878-885; doi:10.1093/nar/gkg176 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Philippe de Diesbach, Francisca N’Kuli, Michel Delmée, and Pierre J. Courtoy

Infection by Mycoplasma hyorhinis strongly enhances uptake of antisense oligonucleotides: a reassessment of receptor-mediated endocytosis in the HepG2 cell line
Nucl. Acids Res. 2003 31: 886-892; doi:10.1093/nar/gkg181 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Alberto Benguría, Pablo Hernández, Dora B. Krimer, and Jorge B. Schvartzman

Sir2p suppresses recombination of replication forks stalled at the replication fork barrier of ribosomal DNA in Saccharomyces cerevisiae
Nucl. Acids Res. 2003 31: 893-898; doi:10.1093/nar/gkg188 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Miya D. Drury and Eric B. Kmiec

DNA pairing is an important step in the process of targeted nucleotide exchange
Nucl. Acids Res. 2003 31: 899-910; doi:10.1093/nar/gkg171 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Eva L. Decker, Nina Nehmann, Eva Kampen, Hermann Eibel, Peter F. Zipfel, and Christine Skerka

Early growth response proteins (EGR) and nuclear factors of activated T cells (NFAT) form heterodimers and regulate proinflammatory cytokine gene expression
Nucl. Acids Res. 2003 31: 911-921; doi:10.1093/nar/gkg186 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

N. Kouprina, T. Ebersole, M. Koriabine, E. Pak, I. B. Rogozin, M. Katoh, M. Oshimura, K. Ogi, M. Peredelchuk, G. Solomon, W. Brown, J. C. Barrett, and V. Larionov

Cloning of human centromeres by transformation-associated recombination in yeast and generation of functional human artificial chromosomes
Nucl. Acids Res. 2003 31: 922-934; doi:10.1093/nar/gkg182 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jun Hirayama, Itsuki Fukuda, Tomoko Ishikawa, Yuri Kobayashi, and Takeshi Todo

New role of zCRY and zPER2 as regulators of sub-cellular distributions of zCLOCK and zBMAL proteins
Nucl. Acids Res. 2003 31: 935-943; doi:10.1093/nar/gkg174 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jun-tao Guo, Dong Xu, Dongsup Kim, and Ying Xu

Improving the performance of DomainParser for structural domain partition using neural network
Nucl. Acids Res. 2003 31: 944-952; doi:10.1093/nar/gkg189 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Kees Fluiter, Anneloor L. M. A. ten Asbroek, Marit B. de Wissel, Marja E. Jakobs, Margit Wissenbach, Håkan Olsson, Otto Olsen, Henrik Oerum, and Frank Baas

In vivo tumor growth inhibition and biodistribution studies of locked nucleic acid (LNA) antisense oligonucleotides
Nucl. Acids Res. 2003 31: 953-962; doi:10.1093/nar/gkg185 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Mette Christiansen, Tinna Stevnsner, Charlotte Modin, Pia M. Martensen, Robert M. Brosh, Jr, and Vilhelm A. Bohr

Functional consequences of mutations in the conserved SF2 motifs and post-translational phosphorylation of the CSB protein
Nucl. Acids Res. 2003 31: 963-973; doi:10.1093/nar/gkg164 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Deepali Shinde, Yinglei Lai, Fengzhu Sun, and Norman Arnheim

Taq DNA polymerase slippage mutation rates measured by PCR and quasi-likelihood analysis: (CA/GT)_n and (A/T)_n microsatellites
Nucl. Acids Res. 2003 31: 974-980; doi:10.1093/nar/gkg178 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Hiroaki Kawasaki, Eigo Suyama, Mayu Iyo, and Kazunari Taira

siRNAs generated by recombinant human Dicer induce specific and significant but target site-independent gene silencing in human cells
Nucl. Acids Res. 2003 31: 981-987; doi:10.1093/nar/gkg184 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

O. Schrader, T. Baumstark, and D. Riesner

A Mini-RNA containing the tetraloop, wobble-pair and loop E motifs of the central conserved region of potato spindle tuber viroid is processed into a minicircle
Nucl. Acids Res. 2003 31: 988-998; doi:10.1093/nar/gkg193 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Paolo Licciardo, Stefano Amente, Luca Ruggiero, Maria Monti, Piero Pucci, Luigi Lania, and Barbara Majello

The FCP1 phosphatase interacts with RNA polymerase II and with MEP50 a component of the methylosome complex involved in the assembly of snRNP
Nucl. Acids Res. 2003 31: 999-1005; doi:10.1093/nar/gkg197 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Elodie Biet, Jian-Sheng Sun, and Marie Dutreix

Stimulation of D-loop formation by polypurine/polypyrimidine sequences
Nucl. Acids Res. 2003 31: 1006-1012; doi:10.1093/nar/gkg195 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jacqueline Schmuckli-Maurer, Michael Rolfsmeier, Ho Nguyen, and Wolf-Dietrich Heyer

Genome instability in rad54 mutants of Saccharomyces cerevisiae
Nucl. Acids Res. 2003 31: 1013-1023; doi:10.1093/nar/gkg190 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Marcia C. Haigis, Erin L. Kurten, and Ronald T. Raines

Ribonuclease inhibitor as an intracellular sentry
Nucl. Acids Res. 2003 31: 1024-1032; doi:10.1093/nar/gkg163 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Paul M. Harrison, Duncan Milburn, Zhaolei Zhang, Paul Bertone, and Mark Gerstein

Identification of pseudogenes in the Drosophila melanogaster genome
Nucl. Acids Res. 2003 31: 1033-1037; doi:10.1093/nar/gkg169 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Inés Canosa, Gema López, Fernando Rojo, Martin R. Boocock, and Juan C. Alonso

Synapsis and strand exchange in the resolution and DNA inversion reactions catalysed by the ß recombinase
Nucl. Acids Res. 2003 31: 1038-1044; doi:10.1093/nar/gkg166 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Viengsai Vongchampa, Min Dong, Lakshman Gingipalli, and Peter Dedon

Stability of 2'-deoxyxanthosine in DNA
Nucl. Acids Res. 2003 31: 1045-1051; doi:10.1093/nar/gkg177 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Penelope A. Mason, Elizabeth C. Matheson, Andrew G. Hall, and Robert N. Lightowlers

Mismatch repair activity in mammalian mitochondria
Nucl. Acids Res. 2003 31: 1052-1058; doi:10.1093/nar/gkg167 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Angèle Maki, Floyd E. Brownewell, Dongyu Liu, and Eric T. Kool

DNA curvature at A tracts containing a non-polar thymine mimic
Nucl. Acids Res. 2003 31: 1059-1066; doi:10.1093/nar/gkg172 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Rotem Sorek and Hershel M. Safer

A novel algorithm for computational identification of contaminated EST libraries
Nucl. Acids Res. 2003 31: 1067-1074; doi:10.1093/nar/gkg170 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Christophe Pakleza and Jean A. H. Cognet

Biopolymer Chain Elasticity: a novel concept and a least deformation energy principle predicts backbone and overall folding of DNA TTT hairpins in agreement with NMR distances
Nucl. Acids Res. 2003 31: 1075-1085; doi:10.1093/nar/gkg194 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Guillaume P. H. Santini, Christophe Pakleza, and Jean A. H. Cognet

DNA tri- and tetra-loops and RNA tetra-loops hairpins fold as elastic biopolymer chains in agreement with PDB coordinates
Nucl. Acids Res. 2003 31: 1086-1096; doi:10.1093/nar/gkg196 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Warren Davis, Jr, Zhijian J. Chen, Kristina E. Ile, and Kenneth D. Tew

Reciprocal regulation of expression of the human adenosine 5'-triphosphate binding cassette, sub-family A, transporter 2 (ABCA2) promoter by the early growth response-1 (EGR-1) and Sp-family transcription factors
Nucl. Acids Res. 2003 31: 1097-1107; doi:10.1093/nar/gkg192 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Stefan Wuchty

Small worlds in RNA structures
Nucl. Acids Res. 2003 31: 1108-1117; doi:10.1093/nar/gkg162 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

NAR Methods Online:

Daniel Di Giusto and Garry C. King

Single base extension (SBE) with proofreading polymerases and phosphorothioate primers: improved fidelity in single-substrate assays
Nucl. Acids Res. 2003 31: e7; doi:10.1093/nar/gng007 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Faqing Huang

Efficient incorporation of CoA, NAD and FAD into RNA by in vitro transcription
Nucl. Acids Res. 2003 31: e8; doi:10.1093/nar/gng008 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Lee Smith, Peter Underhill, Clare Pritchard, Zuzanna Tymowska-Lalanne, Saba Abdul-Hussein, Helen Hilton, Laura Winchester, Deborah Williams, Tom Freeman, Sarah Webb, and Andy Greenfield

Single primer amplification (SPA) of cDNA for microarray expression analysis
Nucl. Acids Res. 2003 31: e9; doi:10.1093/nar/gng009 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

D. Falke, M. Fisher, D. Ye, and R. L. Juliano

Design of artificial transcription factors to selectively regulate the pro-apoptotic bax gene
Nucl. Acids Res. 2003 31: e10; doi:10.1093/nar/gng010 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Lei Young and Qihan Dong

TAMS technology for simple and efficient in vitro site-directed mutagenesis and mutant screening
Nucl. Acids Res. 2003 31: e11; doi:10.1093/nar/gng01 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

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